Virus Structure and Classification (2B)

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MCAT Biological and Biochemical Foundations of Living Systems › Virus Structure and Classification (2B)

Questions 1 - 10
1

An experiment aims to classify Virus BB as enveloped vs non-enveloped. Researchers treat virions with either (i) detergent, (ii) protease, or (iii) RNase, then measure infectivity. Detergent reduces infectivity by 10,000-fold; protease reduces infectivity by 100-fold; RNase has no effect unless detergent is applied first. Which classification best fits the virus described?

Enveloped virus with a protein capsid protecting its genome

Prion lacking nucleic acid

Bacterium with an outer membrane and plasmid DNA

Non-enveloped virus with genome exposed on the surface

Explanation

The skill being tested is using treatment assays to classify virus structure for MCAT. Enveloped viruses protect genomes via lipid and capsid, detergent exposes to enzymes, protease targets surface proteins. Detergent greatly reduces infectivity, protease moderately, RNase only post-detergent, indicating envelope and internal capsid. Answer D is correct as this pattern shows envelope-mediated protection with protein involvement. Distractor B fails by suggesting exposed genome, ignoring RNase resistance intact, a protection misconception. Verify by sequential treatments. Strategize by assessing enzyme access pre/post-disruption.

2

A lab compares two viruses that bind the same cell-surface receptor. Virus A loses infectivity after exposure to ether, while Virus B retains infectivity. Electron microscopy shows Virus A has a surrounding membrane-like layer with surface spikes; Virus B shows only a protein shell. In a plaque assay, Virus A forms plaques only when cells are not pretreated with a lysosomotropic agent that raises endosomal pH; Virus B plaques are unaffected. Based on the passage, how does the structure influence pathogenicity?

Virus A is acid-stable due to its envelope; Virus B is acid-labile due to its capsid

Virus B must use reverse transcriptase because it lacks an envelope

Virus B enters only by membrane fusion at the plasma membrane because it lacks spikes

Virus A requires endosomal acidification for membrane fusion; Virus B does not rely on a lipid envelope

Explanation

The skill being tested is understanding how virus structure influences entry mechanisms and pathogenicity in MCAT biological contexts. Virus classification involves envelope status (affecting solvent sensitivity and entry pathways) and capsid features (like spikes for fusion). The passage details Virus A as ether-sensitive with a membrane and spikes, requiring normal endosomal pH for plaques, while Virus B is ether-resistant with only a protein shell and unaffected by pH changes. The correct answer A is supported because Virus A's envelope necessitates low-pH endosomal fusion, while Virus B's non-enveloped nature allows pH-independent entry, directly linking structure to pathogenicity. A distractor like B fails by reversing acid stability, misconstruing envelopes as protective against acid when they often confer lability. To verify, compare solvent sensitivity with entry inhibitors. Reason by correlating structural assays (EM, solvents) with functional assays (plaque formation) for entry mechanisms.

3

A virus isolated from blood is sensitive to chloroform and shows a helical nucleocapsid by EM. When infected cells are treated with actinomycin D (inhibits cellular DNA-dependent RNA polymerase II), viral mRNA production is unaffected. However, when cells are treated with a small-molecule inhibitor of viral RNA-dependent RNA polymerase, viral mRNA is abolished. Which classification best fits the virus described?

Prion composed solely of protein

Enveloped DNA virus requiring reverse transcriptase

Enveloped RNA virus requiring an RNA-dependent RNA polymerase

Non-enveloped DNA virus requiring host RNA polymerase II

Explanation

The skill being tested is virus classification via inhibitor responses and structural features for MCAT biological foundations. Viruses are classified by genome (requiring specific polymerases) and envelope (conferring chloroform sensitivity and helical nucleocapsids). The virus is chloroform-sensitive with helical nucleocapsid, unaffected by actinomycin D but blocked by RdRp inhibitor, indicating RNA genome independent of host transcription. Answer A fits as enveloped RNA viruses like paramyxoviruses use viral RdRp for mRNA, matching inhibitor data. Distractor B errs by suggesting host RNA pol II dependence, ignoring actinomycin D insensitivity, a misconception for DNA viruses. Confirm by assaying polymerase inhibitors' effects on replication. Reason by excluding classifications mismatched with structural (EM) and functional (inhibitor) evidence.

4

Researchers isolated an unknown virus (Virus X) from nasal swabs and performed three assays. (i) Infectivity decreased by 3.5 log units after treatment with 0.1% Triton X-100 for 10 min. (ii) Infectivity was unchanged after 30 min at pH 3.0. (iii) In a cell-free translation system, purified viral nucleic acid produced a single polyprotein only when ribosomes were supplied; no DNA-dependent RNA polymerase was required. Which classification best fits the virus described?

Non-enveloped negative-sense single-stranded RNA virus

Enveloped double-stranded RNA virus

Non-enveloped double-stranded DNA virus

Enveloped positive-sense single-stranded RNA virus

Explanation

The skill being tested is the classification of viruses based on their structural features and genomic properties as per MCAT biological foundations. Viruses are classified by envelope presence (affecting detergent sensitivity), genome type (DNA vs RNA, strandedness), and RNA sense (positive vs negative, determining direct translatability). In this passage, Virus X shows detergent sensitivity indicating an envelope, acid stability consistent with some enveloped viruses, and direct translation of its nucleic acid into a polyprotein using only ribosomes, pointing to RNA that functions as mRNA. The correct answer B follows from the data because enveloped viruses are detergent-sensitive, and positive-sense ssRNA genomes can be directly translated without additional polymerases, matching the cell-free system's requirements. A distractor like A fails by assuming a dsDNA genome, misconstruing the lack of need for DNA-dependent RNA polymerase and direct polyprotein production as DNA-based replication. A transferable check is to assess detergent effects for envelopes and translation assays for RNA sense. Additionally, reason by eliminating options that mismatch genome functionality with experimental outcomes.

5

Virus Q is treated with RNase and DNase under two conditions: intact virions vs detergent-disrupted virions. Results: nucleic acid is resistant to both nucleases when intact; after detergent disruption, nucleic acid is degraded by RNase but not DNase. Separately, infectivity is eliminated by detergent but not by protease treatment of intact virions. Which classification best fits the virus described?

Enveloped DNA virus with reverse transcription

Enveloped RNA virus with genome protected inside a capsid

Non-enveloped DNA virus with an exposed genome

Non-enveloped RNA virus whose genome is exposed on the surface

Explanation

The skill being tested is determining virus envelope and genome via protection assays for MCAT classification. Enveloped viruses have lipid bilayers protecting internal capsids and genomes from external enzymes until disrupted. Virus Q's nucleic acid is nuclease-resistant intact but RNase-sensitive post-detergent, with infectivity detergent-labile but protease-resistant intact, suggesting enveloped RNA. Answer B is correct as envelopes shield RNA genomes inside capsids from nucleases, matching degradation patterns. Distractor D errs by implying exposed RNA on non-enveloped surface, ignoring protection until disruption, a capsid misconception. Check nuclease effects pre/post-disruption for genome type/protection. Strategize by using detergent to distinguish enveloped from non-enveloped.

6

Virus CC is an RNA virus. In infected cells, viral mRNA appears only after a delay, and purified virions contain an enzyme that synthesizes RNA from an RNA template. When purified genomic RNA is transfected into cells, no viral proteins are detected. Which classification best fits the virus described?

Negative-sense single-stranded RNA virus

Double-stranded DNA virus

Positive-sense single-stranded RNA virus

Single-stranded DNA virus

Explanation

The skill being tested is classifying RNA viruses by replication timing and enzymes for MCAT. Negative-sense ssRNA viruses delay mRNA via RdRp-dependent transcription, unlike immediate positive-sense. Virus CC has delayed mRNA, virion RdRp, transfection failure, indicating -ssRNA. Answer A fits as RdRp synthesizes mRNA from template, explaining delay and transfection. Distractor B errs for +ssRNA, directly translatable, misconstruing delay. Check mRNA kinetics and transfection. Reason by evaluating enzyme packaging and genome functionality.

7

To classify Virus II, investigators perform density-gradient centrifugation. Two peaks are observed: a low-density fraction rich in phospholipid and a higher-density fraction lacking phospholipid. Only the low-density fraction is infectious. Detergent treatment shifts infectivity to zero and eliminates the low-density peak. Which classification best fits the virus described?

Bacteriophage classified by tail length rather than lipid content

Prion that separates by protein density only

Enveloped virus whose lipid membrane contributes to buoyant density and infectivity

Non-enveloped virus with two different capsid symmetries

Explanation

The skill being tested is using biophysical methods to classify enveloped viruses for MCAT. Enveloped viruses have lower density due to lipids, essential for infectivity. Virus II separates into lipid-rich low-density infectious and high-density non-infectious, detergent eliminates low-density/infectivity. Answer A is correct as lipid envelope contributes density and function. Distractor B fails by suggesting two symmetries, misconstruing density peaks. Verify with density and treatment. Strategize by correlating fractions with components/infectivity.

8

A lab is classifying Virus R. EM shows a bullet-shaped particle with a helical nucleocapsid. Infectivity is reduced by detergents. When virions are UV-inactivated (damaging nucleic acid) but proteins remain intact, the particles still mediate membrane fusion in a liposome assay. Based on the passage, how does the structure influence pathogenicity?

Bullet shape implies the genome is double-stranded DNA and must enter the nucleus for transcription

Helical capsids prevent membrane fusion, so UV treatment should increase infectivity

Envelope glycoproteins can drive fusion independent of genome integrity, enabling entry steps even when replication is blocked

Detergent sensitivity indicates the virus is non-enveloped and relies on capsid pores for entry

Explanation

The skill being tested is relating virus structure to entry and replication in pathogenicity for MCAT. Enveloped viruses use glycoproteins for fusion, separable from genome integrity, unlike non-enveloped relying on capsids. Virus R is bullet-shaped, helical, detergent-sensitive, and UV-inactivated particles still fuse membranes, indicating envelope-mediated entry. Answer C is correct as envelopes enable fusion via proteins, independent of nucleic acid, influencing pathogenicity. Distractor B fails by claiming helical capsids prevent fusion, misconstruing shape as inhibitory when it describes nucleocapsid. Verify by testing inactivated virions in fusion assays. Reason by separating structural functions from replicative ones.

9

A lab observes that Virus W buds from the host plasma membrane, and purified virions contain host-derived phospholipids. Treatment with neuraminidase (cleaves sialic acids) on target cells reduces viral attachment by 80%. Protease treatment of purified virions reduces attachment by 90% without disrupting the genome. Based on the passage, how does the structure influence pathogenicity?

Neuraminidase treatment reduces attachment by degrading viral RNA

Host phospholipids directly bind sialic acid; protease increases binding by exposing lipids

Budding indicates a non-enveloped virus exiting by cell lysis

Viral surface proteins embedded in a lipid envelope mediate receptor binding; disrupting proteins reduces attachment

Explanation

The skill being tested is understanding enveloped virus attachment mechanisms in pathogenicity for MCAT. Enveloped viruses embed glycoproteins in lipid bilayers for receptor binding, with budding incorporating host lipids. Virus W buds with host phospholipids, neuraminidase reduces attachment, protease disrupts without genome harm. Answer A is correct as envelope proteins bind sialic acid, protease sensitivity confirms protein-mediated attachment. Distractor D errs by claiming neuraminidase degrades RNA, misconstruing enzyme specificity. Verify by treating virions/cells separately. Strategize by using enzyme treatments to identify binding components.

10

A newly identified Virus Y was examined for genome type using nuclease protection assays. Intact virions were resistant to both DNase I and RNase A. After capsid disruption, the extracted genome was degraded by RNase A but not by DNase I. When infected cells were treated with a drug that inhibits RNA-dependent RNA polymerase (RdRp), production of new virions decreased by 95%. Based on these results, which classification best fits Virus Y?

DNA virus that uses host RNA polymerase II to replicate its genome

Prion-like infectious protein lacking a nucleic acid genome

Double-stranded DNA virus that packages reverse transcriptase in the virion

RNA virus that depends on an RdRp during replication

Explanation

This question tests the ability to determine viral genome type through nuclease protection assays and replication inhibitor studies. Virus classification fundamentally distinguishes RNA viruses from DNA viruses based on genome composition and replication strategy. The intact virion's resistance to both nucleases indicates the genome is protected within the capsid, while post-disruption RNase sensitivity (but not DNase sensitivity) definitively identifies an RNA genome. The 95% reduction with RdRp inhibitor confirms this RNA virus uses RNA-dependent RNA polymerase for replication, a hallmark of RNA viruses. Choice B incorrectly suggests a DNA virus, contradicting the RNase sensitivity data. Choice C describes a retrovirus scenario not supported by the data. A key principle is that RNA viruses must encode their own RNA polymerase since host cells lack the machinery to replicate RNA genomes.

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