IB BIOLOGY • CONTINUITY AND CHANGE

Apply Inheritance

Use genetic crosses and probability to predict how traits pass from parents to offspring.

Historical Context & Motivation

For thousands of years, farmers and breeders noticed that offspring tend to resemble their parents, but nobody could explain why some traits appeared, disappeared, or skipped generations. Before the science of genetics existed, inheritance was a mystery wrapped in superstition — some people even believed that a mother's thoughts during pregnancy could shape her child's appearance. The quest to understand inheritance — the biological process by which traits are transmitted from parents to offspring — required careful experimentation, mathematics, and a monk with a garden full of pea plants.

1866
Mendel's Experiments
Gregor Mendel published his work on pea plants, identifying discrete "factors" (later called genes) that follow predictable mathematical ratios across generations. His work was largely ignored for decades.
1900
Rediscovery of Mendel
Three European scientists — de Vries, Correns, and von Tschermak — independently rediscovered Mendel's laws, launching the modern field of genetics.
1905
Punnett Square Invented
Reginald Punnett created a simple grid diagram to predict offspring genotype and phenotype ratios, making genetic crosses accessible to students and researchers alike.
1910
Morgan's Fruit Fly Studies
Thomas Hunt Morgan demonstrated sex-linked inheritance in Drosophila fruit flies, confirming that genes reside on chromosomes.
1953
DNA Structure Revealed
Watson and Crick described the double-helix structure of DNA, providing a molecular basis for how genetic information is copied and inherited.

Mendel's great insight was that inheritance is not a blending process but rather involves discrete units passed from parent to offspring. The central question he answered — and the one you will learn to solve in this lesson — is: Given the parents' genetic makeup, what are the possible genotypes and phenotypes of their offspring, and in what ratios?

Core Principles of Inheritance

To apply inheritance, you need a solid grasp of the vocabulary and rules that govern how alleles behave during reproduction. Every organism that reproduces sexually receives one allele from each parent for each gene. The way those alleles interact determines the organism's observable traits.

1

Gene, Allele & Locus

A gene is a segment of DNA coding for a protein. An allele is a specific version of that gene. The locus is the allele's fixed position on a chromosome.
2

Genotype vs. Phenotype

The genotype is the combination of alleles an organism carries (e.g., Bb). The phenotype is the observable trait that results (e.g., brown eyes).
3

Dominant & Recessive

A dominant allele (uppercase, e.g., B) masks the effect of a recessive allele (lowercase, e.g., b). An organism must carry two recessive alleles (bb) to show the recessive phenotype.
4

Homozygous & Heterozygous

Homozygous means both alleles are the same (BB or bb). Heterozygous means the two alleles differ (Bb). A heterozygous individual is also called a carrier of the recessive allele.
5

Mendel's Law of Segregation

During gamete formation (meiosis), the two alleles for each gene segregate so that each gamete carries only one allele. Offspring therefore receive one allele from each parent.
KEY TAKEAWAY
Think of alleles like two playing cards dealt to you — one from your mum's deck and one from your dad's deck. A dominant allele is like an ace: if you hold even one, it "wins" and determines your phenotype. You need two recessive cards (no ace) for the recessive trait to show up.

The Monohybrid Cross — Visual Explanation

A monohybrid cross tracks the inheritance of a single gene with two alleles. The Punnett square below shows the classic cross between two heterozygous parents (Bb × Bb) — for example, two brown-eyed parents who each carry a recessive blue-eye allele.

The Punnett square shows all four possible fertilisation combinations. Three out of four offspring carry at least one dominant B allele (brown eyes), while only one in four is homozygous recessive bb (blue eyes). This produces the famous 3 : 1 phenotype ratio.

Notice that two of the four boxes produce the genotype Bb, which is why heterozygous offspring appear most frequently. The Punnett square is simply a visual way to apply the law of segregation: each parent contributes exactly one allele per gamete, and every combination of maternal and paternal gametes is equally likely. This makes the Punnett square a powerful prediction tool — you can read off both the genotype and phenotype ratios directly from the grid.

Probability & Predicting Offspring Ratios

Inheritance is fundamentally about probability — each fertilisation event is an independent chance occurrence, much like flipping a coin. Because each parent has two alleles and meiosis randomly separates them, the probability of passing on a specific allele to any one offspring is ½ (or 50%). You can combine these individual probabilities to predict the likelihood of any genotype.

PRODUCT RULE (AND)
P(A and B) = P(A) × P(B)
Use when two independent events must both occur. For example, the probability that an offspring receives allele B from the mother AND allele b from the father.
SUM RULE (OR)
P(A or B) = P(A) + P(B)
Use when either of two mutually exclusive outcomes would satisfy the condition. For example, the probability of being heterozygous Bb from mother-B/father-b OR from mother-b/father-B.

Let's apply these rules to the cross Bb × Bb. The probability that an offspring receives B from the mother is ½ and B from the father is ½. Using the product rule, P(BB) = ½ × ½ = ¼. Similarly, P(bb) = ½ × ½ = ¼. For heterozygous Bb, there are two routes: B from mum and b from dad (½ × ½ = ¼), OR b from mum and B from dad (½ × ½ = ¼). Using the sum rule, P(Bb) = ¼ + ¼ = ½. So the genotype ratio is ¼ BB : ½ Bb : ¼ bb, which simplifies to 1 : 2 : 1.

EXPECTED PHENOTYPE RATIO (MONOHYBRID, COMPLETE DOMINANCE)
Dominant : Recessive = 3 : 1
This ratio results from crossing two heterozygous parents (Bb × Bb) when one allele is completely dominant. Three-quarters of offspring show the dominant phenotype (BB + Bb), and one-quarter show the recessive phenotype (bb).
📝 IB Exam Tip
The IB expects you to use correct genetic notation: uppercase for dominant alleles, lowercase for recessive alleles, and the same letter for alleles of the same gene (e.g., B and b, not B and r). In your crosses, always clearly label P generation (parents), gametes, and F₁ / F₂ generation (offspring).

Types of Genetic Crosses

Beyond the standard monohybrid cross, the IB Biology syllabus expects you to work with several variations. Each type follows the same underlying logic — applying segregation and probability — but introduces new layers of complexity. The diagram below compares the key cross types and their expected ratios.

Six important cross types for IB Biology. The top row covers crosses with complete dominance, while the bottom row introduces codominance, sex-linked inheritance, and multiple alleles — patterns that modify the classic Mendelian ratios.

The test cross is especially useful. If an organism shows a dominant phenotype, you cannot tell from its appearance alone whether it is homozygous dominant (BB) or heterozygous (Bb). By crossing it with a homozygous recessive individual (bb), you can deduce the unknown genotype from the offspring ratios. If any offspring show the recessive phenotype, the unknown parent must be heterozygous.

In a dihybrid cross, you track two independently assorting genes simultaneously. This requires Mendel's law of independent assortment: alleles of different genes are distributed to gametes independently of each other (provided the genes are on different chromosomes). A cross between two doubly heterozygous parents (BbRr × BbRr) uses a 4 × 4 Punnett square with 16 boxes, yielding the classic 9 : 3 : 3 : 1 phenotype ratio.

Worked Example — Predicting Offspring from a Genetic Cross

In guinea pigs, black fur (B) is dominant over white fur (b). A heterozygous black guinea pig is crossed with a white guinea pig. Determine the expected genotype and phenotype ratios of the offspring.

Monohybrid Cross: Bb × bb
1
Step 1 — Identify Parental GenotypesParent 1 is heterozygous black: genotype Bb. Parent 2 is white (recessive phenotype), so its genotype must be bb. This is actually a test cross.
2
Step 2 — Determine the GametesParent 1 (Bb) produces two types of gametes: B and b, each with probability ½. Parent 2 (bb) produces only one type of gamete: b.
3
Step 3 — Construct the Punnett SquarePlace Parent 1's gametes along one axis and Parent 2's gametes along the other. The four boxes yield: Bb, Bb, bb, bb.
4
Step 4 — Read the Genotype RatioTwo out of four offspring are Bb and two are bb.
Genotype ratio: 1 Bb : 1 bb (or 1 : 1)
5
Step 5 — Determine the Phenotype RatioBb individuals display the dominant phenotype (black fur). bb individuals display the recessive phenotype (white fur). Therefore, half the offspring are expected to be black and half white.
Phenotype ratio: 1 Black : 1 White (or 1 : 1)
💡 Why is this useful?
The 1 : 1 phenotype ratio confirms that the black parent is heterozygous (Bb). If the black parent had been homozygous (BB), all offspring would have been black. This is the logic behind a test cross — it reveals an unknown genotype through the phenotypes of the offspring.

Strengths & Limitations of Mendelian Predictions

Mendelian inheritance provides a powerful framework for predicting offspring traits, but real-world genetics is often more complex. Understanding both the strengths and limitations of simple genetic crosses helps you interpret exam questions accurately and appreciate the richness of biological inheritance.

Comparing the strengths and limitations of Mendelian inheritance predictions
StrengthsLimitations
Accurately predicts ratios for traits controlled by a single gene with complete dominance.Many traits are polygenic (controlled by multiple genes), so simple ratios don't apply to traits like height or skin colour.
Punnett squares provide a clear, visual method for organising genetic predictions.Predicted ratios are probabilities, not guarantees. Small sample sizes may not match expected ratios.
Works well for autosomal and sex-linked traits when the inheritance pattern is known.Epistasis (one gene masking another) and pleiotropy (one gene affecting multiple traits) alter expected outcomes.
Test crosses allow determination of unknown genotypes using observable phenotypes.Environmental factors can influence phenotype (e.g., temperature-sensitive fur colour in Siamese cats).
Independent assortment enables dihybrid predictions when genes are on different chromosomes.Linked genes (on the same chromosome) do not assort independently, violating the 9:3:3:1 ratio.
KEY TAKEAWAY
Mendel's laws are like Newton's laws of motion — they work brilliantly for straightforward situations but need refinement for more complex cases. Just as air resistance complicates free-fall predictions, factors like epistasis, gene linkage, and environmental effects add complexity to genetic predictions. The simple models remain the essential foundation.

Connection to Advanced Genetics

Mendelian inheritance is the starting point, but modern genetics extends far beyond simple dominant-recessive patterns. As you progress in biology, you will encounter mechanisms that modify or expand upon Mendel's original framework. The table below contrasts what you learn now with concepts you will explore at higher levels.

How Mendelian inheritance connects to more advanced genetic concepts
Mendelian (This Lesson)Advanced Genetics
One gene → one trait with two allelesPolygenic inheritance: many genes contribute to a single continuous trait (e.g., human height)
Complete dominance (one allele fully masks the other)Incomplete dominance: heterozygote has an intermediate phenotype (e.g., pink snapdragons)
Independent assortment of unlinked genesLinked genes on the same chromosome; recombination frequency maps gene distance
Genotype directly determines phenotypeEpigenetics: chemical modifications to DNA/histones alter gene expression without changing sequence
Pedigrees trace single-gene traits through familiesGenome-wide association studies (GWAS) scan thousands of genes for statistical links to complex diseases

For the IB exam, you should be comfortable with Mendelian crosses, codominance, sex linkage, and ABO blood groups. Understanding pedigree analysis — interpreting family trees to deduce inheritance patterns — is also essential. The principles you have learned here form the toolkit that makes all of these analyses possible. As you move into HL topics or university biology, the same probability rules and Punnett square logic extend naturally to more complex inheritance patterns.

Practice Problems

PROBLEM 1CONCEPTUAL
A pea plant with the genotype Tt (where T = tall, t = short) is crossed with another Tt plant. Without drawing a Punnett square, explain why the expected phenotype ratio is 3 tall : 1 short rather than 1 : 1.
PROBLEM 2BASIC CALCULATION
In mice, black coat (B) is dominant over brown coat (b). A homozygous black mouse (BB) is crossed with a brown mouse (bb). State the genotype and phenotype ratios of the F1 generation.
PROBLEM 3INTERMEDIATE
Two F1 mice from the cross above (both Bb) are mated. Out of 48 F2 offspring, how many would you expect to have brown fur? If the actual count is 16 brown mice, suggest a reason for the deviation from the expected number.
PROBLEM 4APPLIED
A woman who is a carrier for haemophilia (XHXh) marries a man with normal blood clotting (XHY). Determine the probability that their first child will be a boy with haemophilia. Show your working using a Punnett square.
PROBLEM 5CRITICAL THINKING
A genetics student crosses two pea plants that are both heterozygous for seed shape (Rr — round is dominant) and seed colour (Yy — yellow is dominant). The student expects a 9 : 3 : 3 : 1 ratio but instead observes a ratio much closer to 3 : 1 (round yellow : wrinkled green) with very few recombinant phenotypes (round green or wrinkled yellow). Propose an explanation for these unexpected results and describe how you could test your hypothesis.

Lesson Summary

Applying inheritance means using Mendel's laws to predict how alleles are passed from parents to offspring and what genotype and phenotype ratios to expect. In a monohybrid cross between two heterozygous parents, the law of segregation produces a 3 : 1 phenotype ratio. The Punnett square is the key visual tool for organising all possible gamete combinations, while the product rule and sum rule of probability let you calculate ratios without a grid.

Beyond simple dominance, you should recognise codominance (both alleles expressed, as in ABO blood groups), sex-linked inheritance (genes on the X chromosome, e.g., haemophilia), and dihybrid crosses governed by the law of independent assortment (expected 9 : 3 : 3 : 1 ratio). A test cross with a homozygous recessive individual reveals whether a dominant-phenotype organism is homozygous or heterozygous. Remember that Mendelian ratios are probabilistic predictions — actual results may vary due to chance, especially in small samples.

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