Understanding Protein and Enzyme Function

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GRE Subject Test: Biology › Understanding Protein and Enzyme Function

Questions 1 - 10
1

Proteins have many functions. Which of the following can be functions of proteins?

I. Enzymes

II. Transcriptional regulators

III. Structural proteins

IV. Hormones

I, II, III, and IV

I, III, and IV

I and II

I, II, and III

I, III, IV

Explanation

Proteins serve all of these functions and many more. Most enzymes are proteins, which help to catalyze spontaneous reactions. Ribozymes can also serve this function but are instead made out of RNA. Proteins can act as transcriptional regulators which can turn on or off gene transcription. Structural proteins, such as actin, can help to maintain the shape of a cell. Other small proteins, such as insulin, can act as hormones which can diffuse throughout the body relaying important messages.

2

Which of the following is not typical of an enzyme?

It increases the amount of products made

It increases the rate of a reaction

It orients the substrates so they can react

It lowers the activation energy of a reaction

Explanation

Enzymes are used to increase the rate of a reaction. This is accomplished by lowering the activation energy required for substrates to react, often by altering the transition state. Enzymes do not, however, increase the amount of products formed; they simply help the equilibrium be reached more quickly. In other words, enzymes change the rate of a reaction, but not the equilibrium.

3

How do enzymes speed up reactions?

By lowering the activation energy required to begin the reaction

By providing additional energy to the system

By altering the net change in free energy of the reaction

By increasing the substrate concentration

Explanation

Enzymes speed up reactions by lowering the energy required to begin the reaction (the activation energy). They do not have any direct effect on the change in free energy, nor do they provide extra energy to the system. Enzymes also cannot alter the substrate concentration. Catalytic action will never be able to influence the equilibrium constant or equilibrium concentrations of a reaction.

4

The Gila monster, H. suspectum, produces a neurotoxic venom containing helothermine, which causes lethargy and partial paralysis of the limbs. Considering that this toxin partially inhibits voluntary muscle contraction, which of the following is the most likely mechanism?

It inhibits channels in the cerebellum

It blocks gates in striated muscle cells

It attacks neural synapses in the brain stem

It degrades myelin sheaths in the motor cortex

It inhibits acetylcholine transmission in the spinal cord

Explanation

Helothermine is a peptide toxin that inhibits calcium channels in the cerebellar granule cells. The cerebellum is the part of the brain that controls voluntary muscle movements such as those in the limbs, and the toxin must be inhibiting very specifically to cause those two symptoms and not total paralysis or other problems.

5

Which of the following statements about the general roles and properties of biological enzymes is not true?

Enzymes are consumed and depleted over the course of a reaction.

Enzymes increase the reaction rate.

Enzymes lower the activation energy of a reaction.

Enzymes do not alter the equilibrium of the reaction.

Biological catalysts do not have to be proteins.

Explanation

Enzymes are not consumed or used up during a reaction, rather they simply increase the rate of reaction by making it "easier" for the reaction to occur, i.e. lowering the activation energy. Equilibrium is not altered by the presence of an enzyme. There are examples of catalytic RNA molecules (ribosomes) and therefore biological catalysts are not always proteins.

6

Which of the following are true about enzyme inhibition?

I. Enzymes can be inhibited by end-products of that enzymatic pathway

II. Competitive inhibitors can lower an enzymes

III. Non-competitive inhibitors inhibit enzyme action by binding to a site other than the active site

IV. Non-competitive inhibitors can lower an enzymes

I, III, and IV

I, II, and III

I, II, and IV

I, and II

I, and IV

Explanation

Enzymes can be inhibited by end products of an enzymatic pathway. This is illustrated in the case of ATP acting as an inhibitor of enzymes found within the pathway for ATP production. This prevents the overabundance of a certain end-product. Competitive inhibitors do not lower an enzymes . Maximal velocity can still be achieved in the presence of a competitive inhibitor, but it requires a higher concentration of substrate to do so. Non-competitive inhibitors can lower an enzymes . This is because non-competitive inhibitors bind to sites other than the active site, known as allosteric binding sites.

7

Enzymes come in many shapes and sizes and serve various functions. Which of the following are characteristics of enzymes?

I. Allow non-spontaneous reactions to occur

II. Bring substrates together in the proper orientation for catalysis

III. Reduce the activation energy of the reaction

IV. Reduce the free energy change of reaction

II and III

I, II, III, and IV

II, III, and IV

II and IV

III only

Explanation

Enzymes are capable of many things but they are not able to help facilitate non-spontaneous reactions. An enzyme can however help spontaneous reactions occur much faster. Enzymes help catalyze reactions by orienting substrates in the necessary positions for reaction. Without enzymes, substrates would have to bump into each other with the exact necessary orientation and energy, which is very rare. Enzymes are capable of lowering the activation energy of a reaction but have no effect on the overall free energy change of a reaction; recall the distinction between kinetics and thermodynamics.

8

The activity of certain enzymes can be modulated via effector binding to __________ sites; regulation at these sites often results in a conformational changes that alters the activity level of the enzyme either positively or negatively without the effector binding to the active site.

allosteric

active

competitive

inhibitory

kinase

Explanation

The definition of allosteric enzyme regulation is that a cofactor or molecule binds and interacts with a site on the enzyme other than the active site. This often changes something about the shape of the enzyme which changes something about its interaction with its substrate, thus modulating how active the enzyme is.

9

What is the group of proteins needed for cell synthesis in bacteria called?

Replisome

TATA box

Chromosome

Cytostome

Spliceosome

Explanation

The replisome is coded for by essential genes passed between bacteria. Without these proteins, a bacterial cell cannot form more cells. "-some" stands for a collection of proteins that function together, and "repli-" for replication. The TATA box is a DNA sequence involved in the indication of the start of a gene, chromosomes are collected strands of genetic material, the spliceosome removes introns from pre-mRNA, but this, along with all post translational modification, only occurs in eukaryotes. The cytosome is the part of the cell that is specialized for phagocytosis.

10

After an unknown compound is added to an enzyme-mediated reaction mixture, the enzyme rate is reduced but remains constant. Which of the following best explains this situation?

The enzyme has been noncompetitively inhibited

The unknown compound is a competitive inhibitor

Cannot be determined from the given information

The unknown compound cooled the solution, thus reducing the reaction rate

The pH of the solution was changed by the unknown compound and deactivated the enzyme

Explanation

The Michaelis-Menten constant is temperature and pH dependent. It is the substrate concentration at which the rate is half of . Noncompetitive inhibitors alter the shape of an enzyme, slowing down the reaction rate without affecting . Competitive inhibitor bind to enzyme active sites, increasing the .

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