Help with Protein Modification

Help Questions

GRE Subject Test: Biochemistry, Cell, and Molecular Biology › Help with Protein Modification

Questions 1 - 7
1

An isomerase __________.

catalyzes the rearrangement of bonds in a single molecule

catalyzes a hydrolytic cleavage reaction

catalyzes the addition of a phosphate group

catalyzes a polymerization reaction

Explanation

An isomerase is an enzyme that catalyzes the rearrangement of bonds in a single molecule. For example glucose-6-phosphate isomerase catalyzes the conversion of glucose-6-phosphate into fructose-6-phosphate during glycolysis.

A hydrolase catalyzes a hydrolytic cleavage reaction, a kinase catalyzes the addition of a phosphate group, and a polymerase catalyzes polymerization reactions.

2

Lipidation is a post-translational modification to a protein that often targets that protein to the plasma membrane. Knowing that lipidation involves covalent bonding of a fatty acid group to a protein, which of the following molecules would be most likely to be attached to a protein for anchorage to a membrane?

Palmitate

Histidine

Tyrosine

Phosphate

Acetyl

Explanation

While each of these molecules could potentially be bound to a protein as a post-translational modification, the only one listed that is a fatty acid is palmitate. Thus, this is the correct answer.

3

In order for kinases to modify their substrates, what small molecule is needed for this reversible post-translational modification?

Adenosine triphosphate

Nicotinamide adenine dinucleotide phosphate

Flavin adenine dinucleotide

Nicotinamide adenine dinucleotide

Guanine nucleotide exchange factor

Explanation

The correct answer is adenosine triphosphate (ATP). In order to phosphorylate a substrate, kinases catalyze the hydrolysis of ATP to adenosine diphosphate (ADP) and inorganic phosphate. This released phosphate by the hydrolysis reaction is covalently added to an amino acid residue on the substrate. Nicotinamide adenine dinucleotide phosphate, flavin adenine dinucleotide, and nicotinamide adenine dinucleotide are proton carriers. Guanine nucleotide exchange factor aids in exchanging guanine diphosphate for guanine triphosphate in a substrate.

4

Which of the following is a protein modification that can initiate the degradation of the modified protein?

Ubiquitination

Myristoylation

Palmitoylation

Isoprenylation

Glycosylation

Explanation

The correct answer is ubiquitination. Ubiquitin is added to the substrate protein to target the protein for degradation by the proteasome, serving as an efficient mechansim to control cellular protein levels. Myristoylation, palmitoylation, isoprenylation, and glycosylation are all post-translational protein modifications that involve the addition of a 14-carbon saturated acid, a 16-carbon saturated acid, an isoprenoid group, and a glycosyl group, respectively. These modifications have diverse functions, however, do not initiate the degradation of the protein.

5

Ubiquitination of proteins is a form of post-translational modification on proteins. Which of the following cellular processes is protein ubiquitination not part of?

All of the answers are cellular processes in which ubiquitination is involved

Immune response

Protein degredation

Apoptosis

Protein recruitment to substrates

Explanation

The correct answer is all of the answers are cellular processes in which ubiquitination is involved. Post-translational ubiquitination of proteins initiates many cellular processes by altering protein activity and the proteins that interact with the ubiquitinated protein.

6

What type of enzyme adds a phosphate group to a protein?

Kinase

Phosphatase

Hydrolase

Catalase

Dehydrogenase

Explanation

A kinase is an enzyme that adds a phosphate group. Do not get this confused with a phosphatase. A phosphatase is an enzyme that removes a phosphate group. The other enzymes listed do not deal with the addition or removal of a phosphate group from a protein.

7

Which of the following is a common post-translational modification used to target proteins to the lysosome?

Addition of a mannose-6-phosphate

Acetylation of lysine residues

Ubiquination

Myristoylation

Explanation

Mannose-6-phosphate is a post-translational modification found on proteins important to the functionality of the lysosome (such as acid hydrolases). Ubiquination is a signal for proteins to be brought to the proteosome and degraded. Myristoylation involves the addition of a fatty acid chain, and is often seen in proteins targeted to the plasma membrane. Acetylation is a common modification found on histones that can help make genes transcriptionally active.

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