Nucleic Acids: DNA and RNA

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Biochemistry › Nucleic Acids: DNA and RNA

Questions 1 - 10
1

Which of the following shows a correct base pair that can occur in DNA?

Adenine-Thymine

Adenine-Uracil

Adenine-Guanine

Guanine-Thymine

Cytosine-Thymine

Explanation

Nucleic acids such as DNA and RNA contain a series of nucleotides, each of which contains a sugar, a nitrogenous base, and a phosphate group. The sugar and phosphate group form the backbone of the linear chain, while the nitrogenous bases are able to protrude out. When hydridizing with other nucleic acid strands, only certain nitrogenous bases can pair with others. This base pairing is due to hydrogen bonds that form between the two nitrogenous bases, and the number of hydrogen bonds differs depending on what bases are involved.

For both DNA and RNA strands, guanine and cytosine will pair with one another via three hydrogen bonds.

In RNA, the nucleotide thymine is absent, but in its place is the nucleotide uracil. Uracil is able to base pair with adenine via two hydrogen bonds, but this only happens in RNA, not DNA!

In DNA, thymine is present rather than uracil. The thymine found in DNA is also able to base pair with adenine via two hydrogen bonds. Thus, out of all the answer choices, this is the only correct one that can occur within DNA.

2

Which answer choice correctly identifies the location of bases and sugar-phosphate chains in a DNA double helix?

The bases are at the core of the DNA, while the sugar-phosphate chains are on the outside.

The sugar-phosphate chains are at the core of the DNA, while the bases are on the outside.

Both the bases and the sugar-phosphate chains are located at the core of the DNA.

Both the bases and the sugar-phosphate chains are located on the outside of the DNA.

None of these

Explanation

While it could be useful to know that the bases are at the core of the DNA while the sugar-phosphate chains are on the outside, it is possible to answer the question without having memorized that fact. The bases (thymine, cytosine, guanine, adenine) are non-polar, and will cluster in the middle of the chain, away from water. They also connect to each other via hydrogen bonding. On the other hand, the sugar-phosphate groups are hydrophilic, and will cluster towards the outside of the molecule.

3

Despite vastly similar structures, DNA and RNA have very different stabilities. Which of the following choices accurately describes the difference in stability between DNA and RNA?

DNA is more stable than RNA because DNA must maintain genetic information for a longer period of time

RNA is more stable than DNA because RNA must maintain genetic information for a longer period of time

DNA is more stable than RNA because DNA contains the base thymine, while RNA contains the base uracil

RNA is more stable than DNA because RNA contains the base uracil, while DNA contains the base thymine

DNA and RNA are both nucleic acids, and thus have the same stability

Explanation

It is true that DNA is more stable than RNA. While the exact chemical reasons for this are complex, it is useful to know RNA is readily hydrolyzed in basic conditions. In order to make sense of this, remember that DNA acts as the genetic code, and must hold that genetic information for relatively long periods of time. While there are several types of RNA, it typically acts as a messenger, and is degraded after completing its task. While DNA does contain the base thymine and RNA does contain uracil, this is unrelated to the relative stabilities of the two nucleic acids.

4

Which of the following statements is false about the double helix of B-DNA (the most commonly found form of DNA)?

The 5' end contains an group, and the 3' end has a free phosphate group.

The sugar-phosphate backbone is on the outside of the molecule.

The two strands are have polarities positioned opposite to each other.

There is a complete turn of the helix at approximately every 10 base pairs.

The adenine and thymine bases are connected by two hydrogen bonds, and the cytosine and guanine are connected by three.

Explanation

The 5' end has a phosphate group, while the 3' end has an . The two strands do, indeed, have opposing polarities; that is, the 5' end of one is positioned next to the 3' end of the other. The sugar-phosphate backbone is on the outside of the molecule, giving it a negative charge. DNA turns once typically every 10.4 pairs, and the distance between the center of nucleotide pairs is about 3.4nm. The adenine (A)-thymine (T) base pair is connected by two hydrogen bonds, and cytosine (C)-guanine (G), three.

5

What is the role of the 5’ to 3’ exonuclease activity in DNA replication?

It chews up RNA primers on the lagging strand.

It separates the strands to allow access of DNA polymerase.

It joins together the Okazaki fragments.

It synthesizes the primers for the leading strand.

Explanation

The lagging strand is made up of Okazaki fragments due to discontinuous replication. Each of the fragments has its own primer made from RNA that needs to be removed and replaced with dNTPs. The exonuclease performs this function. A ligase comes through immediately after the exonuclease and joins the fragments together. Helicase is the enzyme that separates the DNA strands.

6

Transfer RNAs are synthesized by __________.

RNA polymerase III

RNA polymerase I

RNA polymerase II

Primase

DNA polymerase I

Explanation

tRNA is synthesized by RNA polymerase III, mRNA is synthesized by RNA polymerase II, and rRNA is synthesized by RNA polymerase I. DNA polymerase I is involved in DNA synthesis, and specifically, has a 5' to 3' exonuclease functionality, which removes RNA primers laid down by primase and replaces them with DNA nucleotides.

7

What term best describes dark, dense regions of DNA that contain repeating segments?

Heterochromatin

Euchromatin

Chromatids

Kinetochores

Centromeres

Explanation

Heterochromatin is dark, dense, tightly packed, and rich in repeating segments. It is often in cells that are inactive or less active. As such, heterochromatin is sometimes referred to as "non-coding DNA". Euchromatin, on the other hand, is less tightly packed, and more readily coded. Centromeres are the part of the chromosome that attach to kinetochores during cellular division. Finally, The ends of chromosomes are known as telomeres. Of note, centromeres and telomeres are actually both composed of heterochromatin.

8

If a sample of DNA contains 35% cytosine, what percentage of the DNA base pairs are thymine?

15%

30%

35%

20%

Explanation

Chargaff's rules state that guanine (G) = cytosine (C) and adenine (A) = thymine (T). Therefore, since the sample contains 35% C, it must also contain 35% G. 100% - 70% (G + C) leaves 30% left for A and T, or 15% T.

9

What type of bond connects two orthophosphates together?

Anhydride bond

Glycosidic linkage

A double bond

A triple bond

Amide bond

Explanation

Two orthophosphates are connected via anhydride linkage to form the high energy pyrophosphate. This is the "" bond. Glycosidic linkage describes a bond between two or more sugar molecules, not between orthophosphates. This anhydride linkage is made up of single bonds, and not double or triple bonds. An amide bond is the specific chemical name for a peptide bond.

10

How would the of a strand of DNA with a greater percentage of GC base pairs than of AT base pairs compare to a similar strand of DNA with a greater percentage of AT base pairs than of GC base pairs.

A higher

A lower

The same

Not enough information to accurately compare the of the two DNA strands.

It depends on the presence of DNA polymerase

Explanation

The (melting temperature)of DNA is defined as the temperature at which half of the DNA strands would become denatured. It is known that GC base pairs are kept together via hydrogen bonding at three different locations, compared to hydrogen bonding at just two locations in AT base pairs. Because of this additional interaction, a DNA strand with a higher component of GC base pairs will have a higher than one with a higher component of AT base pairs.

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