Fundamentals of Enzyme Kinetics

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Biochemistry › Fundamentals of Enzyme Kinetics

Questions 1 - 10
1

Which of the following does not affect the velocity of an enzyme-catalyzed reaction?

Size of enzyme

Substrate concentration

pH

Temperature

Enzyme concentration

Explanation

The size of an enzyme is typically not indicative of the rate of the reaction that it catalyzes. All other parameters are taken into account when considering reaction velocity.

2

Which of the following is true of allosteric enzymes?

Binding of one active site affects the binding of the other active sites

Allosteric enzymes follow the same rules with respect to Michaelis-Menten kinetics that other enzymes do

These enzymes only have one ligand binding site

Plotting reaction velocity against substrate concentration for an allosteric enzyme is linear

Allosteric enzymes do not have a

Explanation

Allosteric enzymes have multiple active sites, which affect each other. More often than not, allosteric enzymes will have sigmoidal plots when reaction velocity is plotted against enzyme concentration, and thereby display cooperativity. Cooperativity means that when one active site is bound by substrate, the other sites become easier to bind for substrate. Hemoglobin is a notable example of a protein that exhibits this type of enzyme kinetics.

3

The oxygen binding curve for hemoglobin is sigmoidal, whereas that for myoglobin is hyperbolic. Why is this the case?

Myoglobin, with one subunit, binds to a single ligand, whereas hemoglobin, with four subunits, utilizes cooperative binding

Myoglobin, with one subunit, utilizes cooperative binding, whereas hemoglobin, with four subunits, binds to a single ligand

Hemoglobin, with one subunit, utilizes cooperative binding, whereas myoglobin, with four subunits, binds to a single ligand

Myoglobin, with four subunits, utilizes cooperative binding, whereas hemoglobin, with one subunit, binds to a single ligand

Both myoglobin and hemoglobin have four subunits, but myoglobin utilizes single-ligand binding whereas hemoglobin uses cooperative binding

Explanation

Both myoglobin (Mb) and hemoglobin (Hb) use heme groups to bind to oxygen. However, Hb contains four heme groups, whereas Mb contains only one. Single-ligand binding appears as a hyperbolic curve in ligand binding graphs, whereas sigmoidal curves indicate cooperative binding. As one ligand (oxygen) binds to hemoglobin, this makes it easier and more favorable for the second oxygen to bind, and so on for the third and finally the fourth oxygen; each oxygen binding allows the one following it to bind more easily. This behavior is responsible for creating the sigmoidal curve - the slope of the curve increases with pressure, indicating better binding capability, up to the point where the Hb starts to become totally saturated with oxygen molecules.

4

All of the following are false regarding catalysts except __________.

that they lower the Ea (activation energy) of a reaction

that they can make non-spontaneous reactions occur.

that they change the of a reaction.

that they are consumed and not regenerated in a reaction.

All of the other choices are false statements regarding catalysts.

Explanation

A catalyst works to speed up a reaction by lowering the Ea (activation energy), which is related to chemical kinetics. A catalyst has nothing to do with thermodynamics, and can neither change the of a reaction, nor make a non-spontaneous one occur.

Additionally, by definition a catalyst is not consumed in a reaction, and it is regenerated after the reaction occurs. This allows for the possibility of a catalyst having an enormous impact on the rate of a reaction, as it is can once again exert its effects after being regenerated.

5

Which of the following is false about enzymes?

They change the equilibrium of product formation

They lower the activation energy of product formation

They increase the rate of product formation

They are substrate-specific

None of these answers are false

Explanation

Enzymes are substrate specific molecules that lower the activation energy and increase the reaction rate of product formation. Enzymes do not change the equilibrium of product formation; this characteristic stays the same under the influence of enzymes.

6

What is the term for an enzyme that is noncovalently or covalently bound to a coenzyme?

Holoenzyme

Apoenzyme

Prosthetic enzyme

Kinase

Phosphorylase

Explanation

Apoenzymes are holoenzymes without a coenzyme. There are no prosthetic enzymes, only prosthetic groups. Phosphorylases generally remove phosphate groups from substrates, and kinases generally add phosphate groups to substrates.

7

Which of the following is not a method by which enzyme activity is regulated?

Kinetic control

Covalent modification

Proteolytic cleavage

Association with other peptides

Allosteric regulation

Explanation

Covalent modification - e.g phosphorylating a molecule to activate it.

Proteolytic cleavage - e.g zymogen becoming activated when cleaved.

Association with other polypeptides - e.g enzyme may have both catalytic and regulatory subunits - regulatory controls activity of the catalytic.

Allosteric regulation - e.g allosteric site on an enzyme that can become bound by a molecule, altering the protein's function.

8

Which of the following terms describe the substrate concentration at which an enzyme's catalyzed reaction rate is at one-half of its maximum rate?

Michaelis constant

Rate constant

Equilibrium constant

None of these

Explanation

From the answer choices, we see that there are a variety of constants that we're presented with. However, it is the Michaelis constant that signifies the amount of substrate at which an enzymatic reaction will be at half of its maximum value. The other constants, though related in some way to enzymatic reactions, do not answer the question.

The rate constant signifies the reaction rate at any given point in time, while the equilibrium constant is a thermodynamic value that tells us the spontaneity of the reaction.

9

A reaction that is directly proportional to the reactant concentration is considered to be which of the following?

First order reaction

Zeroth order reaction

Second order reaction

Bimolecular reaction

Third order reaction

Explanation

A first order reaction is one in which the amount of product is dependent on only one reactant. For instance:

The above reaction is first order because the amount of product produced depends solely on the concentration of A. Therefore, a first order reaction is one in which the reaction is directly proportional to the reactant concentration.

Note: bimolecular reaction and second order reaction are synonymous.

10

Why does a reaction acting at not increase in rate with the addition of more substrate?

An enzyme at is saturated with substrate

An enzyme at is saturated with product

A substrate at is saturated with enzyme

An substrate at is saturated with product

None of the other answers

Explanation

is the maximal velocity of an enzyme-catalyzed reaction. This occurs when all active sites of enzymes are occupied with substrate, and new openings will be filled immediately from the excess substrate. The enzyme is saturated with excessive substrate, so the reaction velocity no longer depends on substrate concentration.

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