Macromolecule Fundamentals

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Biochemistry › Macromolecule Fundamentals

Questions 1 - 10
1

Which amino acid contains neither sulfur nor nitrogen in its side chain?

Tyrosine

Cysteine

Methionine

Asparagine

Arginine

Explanation

Within the side chain of tyrosine, there is a phenol group. However, a phenol group contains neither sulfur nor nitrogen. Methionine and cysteine are the only two amino acids that contain sulfur, which is worth memorizing. Seven amino acids contain nitrogen, including arginine and asparagine.

2

Which amino acid contains neither sulfur nor nitrogen in its side chain?

Tyrosine

Cysteine

Methionine

Asparagine

Arginine

Explanation

Within the side chain of tyrosine, there is a phenol group. However, a phenol group contains neither sulfur nor nitrogen. Methionine and cysteine are the only two amino acids that contain sulfur, which is worth memorizing. Seven amino acids contain nitrogen, including arginine and asparagine.

3

Which of the following is not a nonpolar amino acid?

All choices are nonpolar

Glycine

Leucine

Isoleucine

Tryptophan

Explanation

Typically, nonpolar amino acids have side chains containing only carbons and hydrogens. The side chain on glycine contains only a hydrogen, and is nonpolar. The side chains on leucine and isoleucine contain nothing but carbons and hydrogens, so they are also nonpolar. Finally, the side chain on tryptophan does contain a nitrogen. However, tryptophan is large enough and contains enough carbons to balance out the increased electronegativity of the nitrogen within the side chain. Therefore, tryptophan, along with the rest of the answer choices, is nonpolar.

4

Which level of protein structure is described by the association of multiple subunits into a functional multimeric protein?

Quarternary structure

Primary Structure

Secondary Structure

Tertiary Structure

0 degree structure

Explanation

Quarternary structure is the association of multiple polypeptide chains into a functional protein. Not all proteins have this level of protein structure. Subunits within the quarternary structure are held together by noncovalent bonds and disulfide bonds.

5

Which of the following is not a nonpolar amino acid?

All choices are nonpolar

Glycine

Leucine

Isoleucine

Tryptophan

Explanation

Typically, nonpolar amino acids have side chains containing only carbons and hydrogens. The side chain on glycine contains only a hydrogen, and is nonpolar. The side chains on leucine and isoleucine contain nothing but carbons and hydrogens, so they are also nonpolar. Finally, the side chain on tryptophan does contain a nitrogen. However, tryptophan is large enough and contains enough carbons to balance out the increased electronegativity of the nitrogen within the side chain. Therefore, tryptophan, along with the rest of the answer choices, is nonpolar.

6

Which level of protein structure is described by the association of multiple subunits into a functional multimeric protein?

Quarternary structure

Primary Structure

Secondary Structure

Tertiary Structure

0 degree structure

Explanation

Quarternary structure is the association of multiple polypeptide chains into a functional protein. Not all proteins have this level of protein structure. Subunits within the quarternary structure are held together by noncovalent bonds and disulfide bonds.

7

How many distinct tetrapeptides can be made from one unit each of Asp, Trp, Phe, and Arg?

Explanation

"Asp" refers to aspartic acid; "Trp" refers to tryptophan; "Phe" refers to phenylalanine; and "Arg" refers to arginine.

A peptide bond is made from joining the amino group of one amino acid to the carboxyl group of another. A tetrapeptide is a peptide consisting of four amino acids, which are connected via peptide bonds. There are several ways in which these four amino acids could be joined. Any of the four could be located at the first position; any of the remaining three could be located at the second position; either of the remaining two at the third position, etc. Thus, there are possible tetrapeptides.

Asp-Trp-Phe-Arg

Asp-Trp-Arg-Phe

Asp-Arg-Phe-Trp

Asp-Arg-Trp-Phe

Asp-Phe-Trp-Arg

Asp-Phe-Arg-Trp

Phe-Asp-Trp-Arg

Phe-Asp-Arg-Trp

Phe-Trp-Asp-Arg

Phe-Trp-Arg-Asp

Phe-Arg-Trp-Asp

Phe-Arg-Asp-Trp

Trp-Asp-Phe-Arg

Trp-Asp-Arg-Phe

Trp-Phe-Arg-Asp

Trp-Phe-Asp-Arg

Trp-Arg-Phe-Asp

Trp-Arg-Asp-Phe

Arg-Asp-Phe-Trp

Arg-Asp-Trp-Phe

Arg-Phe-Trp-Asp

Arg-Phe-Asp-Trp

Arg-Trp-Phe-Asp

Arg-Trp-Asp-Phe

8

All Amino Acids are considered amphoteric.

If a substance is said to be amphoteric, what is true of this substance?

It can act as an acid or a base

It can function in both cold and warm temperatures

It can function in high salt environments

It as a polar head and a non-polar tail

It does not contain carbon

Explanation

Amphoteric substances can act as an acid or a base. An example of an amphoteric substance is an amino acid. Amphipathic is the term assigned to molecules that possesses both hydrophilic and hydrophobic regions. An example of an amphipathic molecule is a phospholipid. Compounds that do not contain carbon are typically referred to as inorganic.

9

Phenylketonurics have a deficiency of phenylalanine hydroxylase. Which of the following describes the effect of this deficiency?

Convert phenylalanine to tyrosine

Convert tyrosine to L-dopa

Convert tyrosine to T3 and T4

Convert phenylalanine to tryptophan

Convert tyrosine to melanin

Explanation

In phenylketonurics, the body cannot convert phenylalanine into tyrosine due to deficiency in phenylalanine hydroxylase. This can be observed by looking at the structures of these amino acids, as they only differ by the hydroxyl group on the benzene ring. Tyrosine is a necessary precursor to L-DOPA (dihydroxyphenylalanine), dopamine, catecholamine neurotransmitters, melanin, thyroid hormones, and other biologically relevant substances.

10

A researcher denatures a polypeptide. What can you conclude about this denatured polypeptide?

It will have lost its intermolecular forces between nitrogen and hydrogen atoms

It will have beta-pleated sheets, but will not have alpha helices

It will have a reduced number of amino acid residues

The hydrophobic side chains will be replaced with hydrophilic side chains

Explanation

Denaturing a polypeptide is the process of disrupting the secondary, tertiary, and quaternary structures. This means that denaturing a protein will lead to disruption in intermolecular forces such as hydrogen bonds. Recall that hydrogen bonds occur between a hydrogen atom and either a nitrogen, oxygen, or fluorine atom; therefore, denaturing a polypeptide will cause a disruption in the intermolecular forces between nitrogen and hydrogen (hydrogen bonds).

Secondary structures can form unique structures called beta-pleated sheets or alpha helices. The beta-pleated sheets are formed when a polypeptide chain folds in such a way that it loops back to lie adjacent to an earlier segment. Alpha helices are formed when a polypeptide chain twists and forms a helical structure. Note that both of these structures involve intermolecular forces (hydrogen bonds, van der Waals, etc.) between amino acids. Denaturing a polypeptide will disrupt both of these structures.

Recall that a denatured polypeptide will not lose its peptide bonds; therefore, the polypeptide will have its original number and sequence of amino acids (primary structure). The side chains of amino acids will not change during denaturation. The intermolecular forces and disulfide bonds between adjacent amino acids will change, but the composition of each amino acid won’t change.

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