Protein Folding

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Biochemistry › Protein Folding

Questions 1 - 10
1

Sickle cell anemia is caused by a point mutation in hemoglobin, where a glutamate residue is changed to a valine. Based on this mutation mechanism, what level of protein structure is affected by sickle cell anemia?

Primary structure

Secondary structure

Tertiary structure

Quaternary structure

Explanation

Because an amino acid has been altered in sickle cell anemia, we can say that the amino acid sequence for hemoglobin has been changed. The amino acid sequence is defined as the primary structure for a protein, so that is the level that has been altered. It should be noted that the subsequent levels of protein structure would be altered as well, but the manipulation of the amino acid sequence is a changing of the primary structure first.

2

How many amino acids are per turn in an alpha helix secondary structure?

3.6

7.2

10.4

1.8

0.4

Explanation

Polypeptide chains in proteins fold to attain a more compact secondary structure. The two forms of secondary structures are alpha helices and beta sheets. Amino acids that are separated by three or four residues in a polypeptide chain within a secondary alpha helix structure are spatially close and can form hydrogen bonds.

3

Which of the following best explains a quaternary structure of a protein?

Hydrogen and disulfide bonds, two or more polypeptide chains

Hydrogen bonds, alpha-helices and beta-pleated sheets

Linear sequence of amino acids

Disulfide bonds, single polypeptide chain

Collagen and myoglobin

Explanation

Primary structure: linear sequence of amino acids

Secondary structure: hydrogen bonds, alpha-helices and beta-pleated sheets

Tertiary structure: disulfide bonds, single polypeptide chain

Myoglobin is a monomer, and is made of a single polypeptide chain. Thus, its highest level of protein structure is tertiary. While collagen does contain different polypeptide chains, it is an example of a protein with quaternary structure, not an explanation of what this means.

4

Sickle cell anemia is caused by a point mutation in hemoglobin, where a glutamate residue is changed to a valine. Based on this mutation mechanism, what level of protein structure is affected by sickle cell anemia?

Primary structure

Secondary structure

Tertiary structure

Quaternary structure

Explanation

Because an amino acid has been altered in sickle cell anemia, we can say that the amino acid sequence for hemoglobin has been changed. The amino acid sequence is defined as the primary structure for a protein, so that is the level that has been altered. It should be noted that the subsequent levels of protein structure would be altered as well, but the manipulation of the amino acid sequence is a changing of the primary structure first.

5

How many amino acids are per turn in an alpha helix secondary structure?

3.6

7.2

10.4

1.8

0.4

Explanation

Polypeptide chains in proteins fold to attain a more compact secondary structure. The two forms of secondary structures are alpha helices and beta sheets. Amino acids that are separated by three or four residues in a polypeptide chain within a secondary alpha helix structure are spatially close and can form hydrogen bonds.

6

Which of the following best explains a quaternary structure of a protein?

Hydrogen and disulfide bonds, two or more polypeptide chains

Hydrogen bonds, alpha-helices and beta-pleated sheets

Linear sequence of amino acids

Disulfide bonds, single polypeptide chain

Collagen and myoglobin

Explanation

Primary structure: linear sequence of amino acids

Secondary structure: hydrogen bonds, alpha-helices and beta-pleated sheets

Tertiary structure: disulfide bonds, single polypeptide chain

Myoglobin is a monomer, and is made of a single polypeptide chain. Thus, its highest level of protein structure is tertiary. While collagen does contain different polypeptide chains, it is an example of a protein with quaternary structure, not an explanation of what this means.

7

2-mercaptoethanol is a chemical agent used in denaturing proteins. Its primary method of denaturing involves separating disulfide bonds. Based on this method of denaturation, what is the lowest level of protein structure affected by 2-mercaptoethanol?

Tertiary structure

Primary structure

Secondary structure

Quaternary structure

Explanation

A disulfide bond is created by two cysteine residues coming together and creating a sulfur-sulfur linkage. This type of linkage contributes to the tertiary structure of proteins. It can also be seen in quaternary structure between peptide subunits, but tertiary structure is the first level where this force can be observed.

8

Which of the following amino acids is least likely to be found in the middle of an alpha helix?

Proline

Glutamic acid

Methionine

Serine

Explanation

Proline is bound to two alkyl groups thus giving it a planar configuration, giving the nitrogen only the ability to accept hydrogen bonds not donate them. While this is not a problem at the beginning of an alpha helix this can disturb the bonds if place further down the chain. Thus proline is often referred to as the "alpha helix buster."

9

Which of the following amino acids is least likely to be found in the middle of an alpha helix?

Proline

Glutamic acid

Methionine

Serine

Explanation

Proline is bound to two alkyl groups thus giving it a planar configuration, giving the nitrogen only the ability to accept hydrogen bonds not donate them. While this is not a problem at the beginning of an alpha helix this can disturb the bonds if place further down the chain. Thus proline is often referred to as the "alpha helix buster."

10

2-mercaptoethanol is a chemical agent used in denaturing proteins. Its primary method of denaturing involves separating disulfide bonds. Based on this method of denaturation, what is the lowest level of protein structure affected by 2-mercaptoethanol?

Tertiary structure

Primary structure

Secondary structure

Quaternary structure

Explanation

A disulfide bond is created by two cysteine residues coming together and creating a sulfur-sulfur linkage. This type of linkage contributes to the tertiary structure of proteins. It can also be seen in quaternary structure between peptide subunits, but tertiary structure is the first level where this force can be observed.

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