Protein Catabolism

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Biochemistry › Protein Catabolism

Questions 1 - 10
1

The urea cycle is vital to the excretion of ammonia, a harmful byproduct of amino acid breakdown.

What enzyme in the urea cycle converts L-ornithine to L-citrulline?

Ornithine transcarbamylase

Argininosuccinate synthetase

Argininosuccinate lyase

Ornithine synthetase

Explanation

Ornithine transcarbamylase catalyzes the reaction between the substrates ornithine and carbamoyl phosphate to form citrulline and phosphate. This process occurs primarily in the hepatic mitochondria, and to a lesser extent in the mitochondria of the renal cells.

2

The urea cycle is vital to the excretion of ammonia, a harmful byproduct of amino acid breakdown.

What enzyme in the urea cycle converts L-ornithine to L-citrulline?

Ornithine transcarbamylase

Argininosuccinate synthetase

Argininosuccinate lyase

Ornithine synthetase

Explanation

Ornithine transcarbamylase catalyzes the reaction between the substrates ornithine and carbamoyl phosphate to form citrulline and phosphate. This process occurs primarily in the hepatic mitochondria, and to a lesser extent in the mitochondria of the renal cells.

3

The enzyme responsible for the reaction that produces ammonia during amino acid deamination is ___________.

glutamate dehydrogenase

carbamoyl phosphate synthetase

cathepsin

aminotransferase

pyridoxal-5’-phosphate

Explanation

The correct answer is "glutamate dehydrogenase." Glutamate is the only amino acid that has an enzyme that removes its amino group as ammonia, rather than just transferring the amino group to a α-keto acid and forming a new amino acid. The transfer of amino groups, which may form glutamate, is performed by aminotransferases that require pyridoxal-5’-phosphate as a cofactor. Cathepsins are a type of proteases contained in lysosomes, and they break down proteins into amino acids rather than metabolize the amino acids themselves. Carbamoyl phosphate synthase is not involved in deamination, but rather condenses ammonia with bicarbonate to enter the urea cycle.

4

The first step in the metabolism of most amino acids is the removal of the amino group by aminotransferases. What is the product of this reaction?

-keto acid

Schiff base

Aldimine

-keto acid

-hydroxy acid

Explanation

Aminotransferases (transaminases) catalyze the conversion of an amino acid to an -keto acid. To do so, they utilize a pyridoxyl phosphate coenzyme, which mediates the transfer of the amino group, leaving a ketone functional group next to the carboxyl group. This -keto acid is the product. Since the amino group in an amino acid is attached to the alpha carbon, it will not be a -keto acid. Some of the other answer choices give intermediates of the reaction mechanism, not the product.

5

The first step in the metabolism of most amino acids is the removal of the amino group by aminotransferases. What is the product of this reaction?

-keto acid

Schiff base

Aldimine

-keto acid

-hydroxy acid

Explanation

Aminotransferases (transaminases) catalyze the conversion of an amino acid to an -keto acid. To do so, they utilize a pyridoxyl phosphate coenzyme, which mediates the transfer of the amino group, leaving a ketone functional group next to the carboxyl group. This -keto acid is the product. Since the amino group in an amino acid is attached to the alpha carbon, it will not be a -keto acid. Some of the other answer choices give intermediates of the reaction mechanism, not the product.

6

The enzyme responsible for the reaction that produces ammonia during amino acid deamination is ___________.

glutamate dehydrogenase

carbamoyl phosphate synthetase

cathepsin

aminotransferase

pyridoxal-5’-phosphate

Explanation

The correct answer is "glutamate dehydrogenase." Glutamate is the only amino acid that has an enzyme that removes its amino group as ammonia, rather than just transferring the amino group to a α-keto acid and forming a new amino acid. The transfer of amino groups, which may form glutamate, is performed by aminotransferases that require pyridoxal-5’-phosphate as a cofactor. Cathepsins are a type of proteases contained in lysosomes, and they break down proteins into amino acids rather than metabolize the amino acids themselves. Carbamoyl phosphate synthase is not involved in deamination, but rather condenses ammonia with bicarbonate to enter the urea cycle.

7

What is the purpose of the urea cycle?

Conversion of ammonia to urea so that it can be excreted in the urine

Conversion of urea into ammonia so that it can be excreted in the urine

Synthesis of urea, a necessary part of renal acid/base balance

Concentration of digestive byproducts in the renal tubules for excretion

Explanation

The urea cycle is vital to the excretion of ammonia, a harmful byproduct of amino acid breakdown. Via a series of enzymatic changes, ammonia is converted to urea, which can be excreted into the urine.

8

What is the purpose of the urea cycle?

Conversion of ammonia to urea so that it can be excreted in the urine

Conversion of urea into ammonia so that it can be excreted in the urine

Synthesis of urea, a necessary part of renal acid/base balance

Concentration of digestive byproducts in the renal tubules for excretion

Explanation

The urea cycle is vital to the excretion of ammonia, a harmful byproduct of amino acid breakdown. Via a series of enzymatic changes, ammonia is converted to urea, which can be excreted into the urine.

9

Where does the urea cycle occur?

Primarily in the liver, secondarily in the kidney

Primarily in the kidney, secondarily in the liver

Exclusively in the kidney

Primarily in the kidney, secondarily in the duodenum

Explanation

The urea cycle occurs primarily in the liver, and to a lesser extent in renal cells. There is no urea conversion performed by the small intestine.

10

How is most of the ammonium waste removed from the body?

Urea synthesis in the liver

Excreted in the urine

Excreted in the feces

Conversion to ammonia in the liver

Ammonium remains in the blood until it is needed

Explanation

When proteins and amino acids are broken down in the body, ammonium is created as a byproduct. Ammonium is dangerous when it remains free in the human body, so something must be done to get rid of it. The major route of removal of ammonium by the body is via urea synthesis in the liver. Urea can then be excreted in urine.

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